Publications

  • See google scholar and ORCID.
  • Co-first and co-last authors are indicated by * and †, respectively.
  • For selected publications with context, see research.

Preprints

P29 Generalizing RNA velocity to transient cell states through dynamical modeling
V Bergen, M Lange, S Peidli, FA Wolf†, FJ Theis†
bioRxiv (2019) pdf code

P28 Conditional out-of-sample generation for unpaired data using transfer VAE
M Lotfollahi, M Naghipourfar, FJ Theis†, FA Wolf†
arXiv (2019) pdf code

Reviewed journal articles

P27 scGen predicts single-cell perturbation responses
M Lotfollahi, FA Wolf†, FJ Theis†
Nature Methods (2019) bioRxiv pdf code

P26 PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
FA Wolf, F Hamey, M Plass, J Solana, JS Dahlin, B Göttgens, N Rajewsky, L Simon, FJ Theis
Genome Biology (2019) bioRxiv pdf code

P25 A test metric for assessing single-cell RNA-seq batch correction
M Büttner*, Z Miao*, FA Wolf, SA Teichmann†, FJ Theis†
Nature Methods (2018) bioRxiv pdf code

P24 Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics
M Plass*, J Solana*, FA Wolf, S Ayoub, A Misios, P Glažar, B Obermayer, FJ Theis, C Kocks, N Rajewsky
Science (2018) pdf code

P23 Scanpy: large-scale single-cell gene expression data analysis
FA Wolf, P Angerer, FJ Theis
Genome Biology (2018) bioRxiv pdf code

P22 Single cells make big data: New challenges and opportunities in transcriptomics
P Angerer, L Simon, S Tritschler, FA Wolf, D Fischer, FJ Theis
Current Opinion in Systems Biology (2017)

P21 Model-based branching point detection in single-cell data by K-Branches clustering
NK Chlis, FA Wolf, FJ Theis
Bioinformatics (2017) bioRxiv code

P20 Reconstructing cell cycle and disease progression using deep learning
P Eulenberg*, N Köhler*, T Blasi, A Filby, AE Carpenter, P Rees, FJ Theis†, FA Wolf†
Nature Communications (2017) bioRxiv pdf code

P19 Diffusion pseudotime robustly reconstructs branching cellular lineages
L Haghverdi, M Büttner, FA Wolf, F Buettner, FJ Theis
Nature Methods (2016) bioRxiv pdf

P18 Imaginary-time matrix product state impurity solver for dynamical mean-field theory
FA Wolf, A Go, IP McCulloch, AJ Millis, U Schollwöck
Physical Review X (2015) arXiv pdf

P17 How to discretize a quantum bath for real-time evolution
Id Vega, U Schollwöck, FA Wolf
Physical Review B (2015) arXiv pdf

P16 Non-thermal melting of Neel order in the Hubbard model
K Balzer, FA Wolf, IP McCulloch, P Werner, M Eckstein
Physical Review X (2015) arXiv pdf

P15 Strictly single-site DMRG algorithm with subspace expansion
C Hubig, IP McCulloch, U Schollwöck, FA Wolf
Physical Review B (2015) arXiv pdf

P14 Spectral functions and time evolution from the Chebyshev recursion
FA Wolf, JA Justiniano, IP McCulloch, U Schollwöck
Physical Review B (2015) arXiv pdf

P13 Solving nonequilibrium dynamical mean-field theory using matrix product states
FA Wolf, IP McCulloch, U Schollwöck
Physical Review B (2014) arXiv pdf

P12 Chebyshev matrix product state impurity solver for dynamical mean-field theory
FA Wolf, IP McCulloch, O Parcollet, U Schollwöck
Physical Review B (2014) arXiv pdf

P11 Electrical and structural analysis of crystal defects after high-temperature rapid thermal annealing of highly boron ion-implanted emitters
J Krügener, R Peibst, FA Wolf, E Bugiel, T Ohrdes, F Kiefer, C Schollhorn, A Grohe, R Brendel, HJ Osten
IEEE Journal of Photovoltaics (2014) ResearchGate pdf

P10 Diffusion and segregation model for the annealing of silicon solar cells implanted with phosphorus
FA Wolf, A Martinez-Limia, D Grote, D Stichtenoth, P Pichler
IEEE Journal of Photovoltaics (2014) ResearchGate pdf

P9 Modeling the annealing of dislocation loops in implanted c-Si solar cells
FA Wolf, A Martinez-Limia, D Stichtenoth, P Pichler
IEEE Journal of Photovoltaics (2014) ResearchGate pdf

P8 A comprehensive model for the diffusion of boron in silicon in presence of fluorine
FA Wolf, A Martinez-Limia, P Pichler
Solid-State Electronics (2013) ResearchGate pdf

P7 Dynamical correlation functions and the quantum Rabi model
FA Wolf, F Vallone, G Romero, M Kollar, E Solano, D Braak
Physical Review A (2013) arXiv pdf

P6 Exact real-time dynamics of the quantum Rabi model
FA Wolf, M Kollar, D Braak
Physical Review A (2012) arXiv pdf

P5 Supercurrent through grain boundaries in the presence of strong correlations
FA Wolf, S Graser, F Loder, T Kopp
Physical Review Letters (2012) arXiv pdf

P4 Expansion of Bose-Hubbard Mott insulators in optical lattices
M Jreissaty, J Carrasquilla, FA Wolf, M Rigol
Physical Review A (2011) arXiv pdf

P3 Generalized Gibbs ensemble prediction of prethermalization plateaus and their relation to nonthermal steady states in integrable systems
M Kollar, FA Wolf, M Eckstein
Physical Review B (2011) arXiv pdf

P2 Collapse and revival oscillations as a probe for the tunneling amplitude in an ultra-cold Bose gas
FA Wolf, I Hen, M Rigol
Physical Review A (2010) arXiv pdf

P1 New theoretical approaches for correlated systems in nonequilibrium
M Eckstein, A Hackl, S Kehrein, M Kollar, M Moeckel, P Werner, FA Wolf
The European Physical Journal Special Topics (2009) arXiv pdf

Other publications

O7 Predicting lung cancer from three dimensional computer tomography scans of the lung
N Köhler, J Jungwirth, M Berthold, FA Wolf
Report (2017) pdf code

O6 Solving dynamical mean-field theory using matrix product states
FA Wolf
PhD Thesis (2015) pdf

O5 Modeling of annealing processes for ion-implanted single-crystalline silicon solar cells
FA Wolf
PhD Thesis (2014) pdf

O4 Supercurrent through grain boundaries in the presence of strong correlations
FA Wolf
Master’s Thesis (2011) pdf

O3 Collapse and revival oscillations as a probe for the tunneling amplitude in an ultra-cold Bose gas
FA Wolf
Report (2010) pdf

O2 Orbital order in a spin-polarized two-band Hubbard model
FA Wolf
Bachelor’s Thesis (2009) pdf

O1 Sartre à Stammheim: son éxistentialisme et l'idéologie de la fraction armée rouge
FA Wolf
High School Thesis (2005) pdf