Publications

More information on google scholar and ORCID. An * signifies equal contributions.

Preprints

P26 Graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
FA Wolf, F Hamey, M Plass, J Solana, JS Dahlin, B Göttgens, N Rajewsky, L Simon, FJ Theis
bioRxiv (2017) pdf code

P25 Assessment of batch-correction methods for scRNA-seq data with a new test metric
M Büttner, Z Miao, FA Wolf, SA Teichmann, FJ Theis
bioRxiv (2017) pdf code

Reviewed journal articles

P24 Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics
M Plass*, J Solana*, FA Wolf, S Ayoub, A Misios, P Glažar, B Obermayer, FJ Theis, C Kocks, N Rajewsky
Science (2018) code

P23 Scanpy: large-scale single-cell gene expression data analysis
FA Wolf, P Angerer, FJ Theis
Genome Biology (2018) bioRxiv pdf code

P22 Single cells make big data: New challenges and opportunities in transcriptomics
P Angerer, L Simon, S Tritschler, FA Wolf, D Fischer, FJ Theis
Current Opinion in Systems Biology (2017)

P21 Model-based branching point detection in single-cell data by K-Branches clustering
NK Chlis, FA Wolf, FJ Theis
Bioinformatics (2017) bioRxiv code

P20 Reconstructing cell cycle and disease progression using deep learning
P Eulenberg*, N Köhler*, T Blasi, A Filby, AE Carpenter, P Rees, FJ Theis, FA Wolf
Nature Communications (2017) bioRxiv pdf code

P19 Diffusion pseudotime robustly reconstructs branching cellular lineages
L Haghverdi, M Büttner, FA Wolf, F Buettner, FJ Theis
Nature Methods (2016) bioRxiv pdf code

P18 Imaginary-time matrix product state impurity solver for dynamical mean-field theory
FA Wolf, A Go, IP McCulloch, AJ Millis, U Schollwöck
Physical Review X (2015) arXiv pdf

P17 How to discretize a quantum bath for real-time evolution
Id Vega, U Schollwöck, FA Wolf
Physical Review B (2015) arXiv pdf

P16 Non-thermal melting of Neel order in the Hubbard model
K Balzer, FA Wolf, IP McCulloch, P Werner, M Eckstein
Physical Review X (2015) arXiv pdf

P15 Strictly Single-Site DMRG Algorithm with Subspace Expansion
C Hubig, IP McCulloch, U Schollwöck, FA Wolf
Physical Review B (2015) arXiv pdf

P14 Spectral functions and time evolution from the Chebyshev recursion
FA Wolf, JA Justiniano, IP McCulloch, U Schollwöck
Physical Review B (2015) arXiv pdf

P13 Solving nonequilibrium dynamical mean-field theory using matrix product states
FA Wolf, IP McCulloch, U Schollwöck
Physical Review B (2014) arXiv pdf

P12 Chebyshev matrix product state impurity solver for dynamical mean-field theory
FA Wolf, IP McCulloch, O Parcollet, U Schollwöck
Physical Review B (2014) arXiv pdf

P11 Electrical and Structural Analysis of Crystal Defects After High-Temperature Rapid Thermal Annealing of Highly Boron Ion-Implanted Emitters
J Krügener, R Peibst, FA Wolf, E Bugiel, T Ohrdes, F Kiefer, C Schollhorn, A Grohe, R Brendel, HJ Osten
IEEE Journal of Photovoltaics (2014) ResearchGate pdf

P10 Diffusion and Segregation Model for the Annealing of Silicon Solar Cells Implanted With Phosphorus
FA Wolf, A Martinez-Limia, D Grote, D Stichtenoth, P Pichler
IEEE Journal of Photovoltaics (2014) ResearchGate pdf

P9 Modeling the Annealing of Dislocation Loops in Implanted c-Si Solar Cells
FA Wolf, A Martinez-Limia, D Stichtenoth, P Pichler
IEEE Journal of Photovoltaics (2014) ResearchGate pdf

P8 A comprehensive model for the diffusion of boron in silicon in presence of fluorine
FA Wolf, A Martinez-Limia, P Pichler
Solid-State Electronics (2013) ResearchGate pdf

P7 Dynamical correlation functions and the quantum Rabi model
FA Wolf, F Vallone, G Romero, M Kollar, E Solano, D Braak
Physical Review A (2013) arXiv pdf

P6 Exact real-time dynamics of the quantum Rabi model
FA Wolf, M Kollar, D Braak
Physical Review A (2012) arXiv pdf

P5 Supercurrent through grain boundaries in the presence of strong correlations
FA Wolf, S Graser, F Loder, T Kopp
Physical Review Letters (2012) arXiv pdf

P4 Expansion of Bose-Hubbard Mott insulators in optical lattices
M Jreissaty, J Carrasquilla, FA Wolf, M Rigol
Physical Review A (2011) arXiv pdf

P3 Generalized Gibbs ensemble prediction of prethermalization plateaus and their relation to nonthermal steady states in integrable systems
M Kollar, FA Wolf, M Eckstein
Physical Review B (2011) arXiv pdf

P2 Collapse and revival oscillations as a probe for the tunneling amplitude in an ultra-cold Bose gas
FA Wolf, I Hen, M Rigol
Physical Review A (2010) arXiv pdf

P1 New theoretical approaches for correlated systems in nonequilibrium
M Eckstein, A Hackl, S Kehrein, M Kollar, M Moeckel, P Werner, FA Wolf
The European Physical Journal Special Topics (2009) arXiv pdf

Other publications

O6 Solving dynamical mean-field theory using matrix product states
PhD Thesis (2015) pdf

O5 Modeling of annealing processes for ion-implanted single-crystalline silicon solar cells
PhD Thesis (2014) pdf

O4 Supercurrent through grain boundaries in the presence of strong correlations
Master’s Thesis (2011) pdf

O3 Collapse and revival oscillations as a probe for the tunneling amplitude in an ultra-cold Bose gas
Report (2010) pdf

O2 Orbital order in a spin-polarized two-band Hubbard model
Bachelor’s Thesis (2009) pdf

O1 Sartre à Stammheim: son éxistentialisme et l'idéologie de la fraction armée rouge
High School Thesis (2005) pdf